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Class: SeparationStep

A step in which phases of the reaction mixture are separated (Separate action).

URI: OBI:0600014

classDiagram class SeparationStep click SeparationStep href "../SeparationStep/" LabSynthesisStep <|-- SeparationStep click LabSynthesisStep href "../LabSynthesisStep/" SeparationStep : carried_out_by SeparationStep --> "* _recommended_" AgenticEntity : carried_out_by click AgenticEntity href "../AgenticEntity/" SeparationStep : description SeparationStep : had_input_activity SeparationStep --> "0..1 _recommended_" LabSynthesisStep : had_input_activity click LabSynthesisStep href "../LabSynthesisStep/" SeparationStep : had_input_entity SeparationStep --> "* _recommended_" Entity : had_input_entity click Entity href "../Entity/" SeparationStep : had_output_entity SeparationStep --> "* _recommended_" Entity : had_output_entity click Entity href "../Entity/" SeparationStep : has_part SeparationStep --> "*" LabSynthesisStep : has_part click LabSynthesisStep href "../LabSynthesisStep/" SeparationStep : has_qualitative_attribute SeparationStep --> "* _recommended_" QualitativeAttribute : has_qualitative_attribute click QualitativeAttribute href "../QualitativeAttribute/" SeparationStep : has_quantitative_attribute SeparationStep --> "* _recommended_" QuantitativeAttribute : has_quantitative_attribute click QuantitativeAttribute href "../QuantitativeAttribute/" SeparationStep : has_successor_step SeparationStep --> "*" LabSynthesisStep : has_successor_step click LabSynthesisStep href "../LabSynthesisStep/" SeparationStep : id SeparationStep : other_identifier SeparationStep --> "*" Identifier : other_identifier click Identifier href "../Identifier/" SeparationStep : part_of SeparationStep --> "*" Activity : part_of click Activity href "../Activity/" SeparationStep : phase_to_keep SeparationStep : rdf_type SeparationStep --> "0..1 _recommended_" DefinedTerm : rdf_type click DefinedTerm href "../DefinedTerm/" SeparationStep : title SeparationStep : type SeparationStep --> "0..1" DefinedTerm : type click DefinedTerm href "../DefinedTerm/" SeparationStep : uses_separation_method SeparationStep --> "* _recommended_" DefinedTerm : uses_separation_method click DefinedTerm href "../DefinedTerm/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
phase_to_keep 0..1
String		 The phase retained after a SeparationStep (e direct
uses_separation_method * recommended
DefinedTerm		 The separation method used in a SeparationStep direct
has_successor_step *
LabSynthesisStep		 Forward pointer from a LabSynthesisStep to the step(s) that follow it LabSynthesisStep
id 1
Uriorcurie		 A slot to provide an URI for an entity within this schema Activity
title *
String		 The slot to provide a title for the Activity Activity
description *
String		 The slot to provide a description for the Activity Activity
other_identifier *
Identifier		 A slot to provide a secondary identifier of the EvaluatedActivity Activity
has_part *
LabSynthesisStep		 The slot to provide an Activity that is part of the Activity Activity
had_input_entity * recommended
Entity		 The slot to specify the Entity that was used as an input of an Activity that ... Activity
had_output_entity * recommended
Entity		 The slot to specify the Entity that was generated as an output of an Activity Activity
had_input_activity 0..1 recommended
LabSynthesisStep		 The slot to provide a previous Activity that informed the Activity by being c... Activity
carried_out_by * recommended
AgenticEntity		 The slot to specify the AgenticEntity that played a certain part in carrying ... Activity
has_qualitative_attribute * recommended
QualitativeAttribute		 The slot to relate a qualitative attribute to an EvaluatedEntity, EvaluatedAc... Activity
has_quantitative_attribute * recommended
QuantitativeAttribute		 The slot to relate a quantitative attribute to an EvaluatedEntity, EvaluatedA... Activity
part_of *
Activity		 The slot to provide an Activity of which the Activity is a part Activity
type 0..1
DefinedTerm		 This slot is described in more detail within the class in which it is used ClassifierMixin
rdf_type 0..1 recommended
DefinedTerm		 The slot to specify the ontology class that is instantiated by an entity ClassifierMixin

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/nfdi-de/dcat-ap-plus/labdata/

Mappings

Mapping Type Mapped Value
self OBI:0600014
native dcatplab:SeparationStep

LinkML Source

Direct

name: SeparationStep
description: A step in which phases of the reaction mixture are separated (Separate
  action).
from_schema: https://w3id.org/nfdi-de/dcat-ap-plus/labdata/
is_a: LabSynthesisStep
slots:
- phase_to_keep
- uses_separation_method
class_uri: OBI:0600014

Induced

name: SeparationStep
description: A step in which phases of the reaction mixture are separated (Separate
  action).
from_schema: https://w3id.org/nfdi-de/dcat-ap-plus/labdata/
is_a: LabSynthesisStep
attributes:
  phase_to_keep:
    name: phase_to_keep
    description: The phase retained after a SeparationStep (e.g. "precipitate", "supernatant",
      "filtrate").
    from_schema: https://w3id.org/nfdi-de/dcat-ap-plus/labdata/
    rank: 1000
    alias: phase_to_keep
    owner: SeparationStep
    domain_of:
    - SeparationStep
    range: string
  uses_separation_method:
    name: uses_separation_method
    description: The separation method used in a SeparationStep.
    from_schema: https://w3id.org/nfdi-de/dcat-ap-plus/labdata/
    rank: 1000
    is_a: has_qualitative_attribute
    slot_uri: SIO:000008
    alias: uses_separation_method
    owner: SeparationStep
    domain_of:
    - SeparationStep
    range: DefinedTerm
    bindings:
    - range: SeparationMethodEnum
      obligation_level: RECOMMENDED
      binds_value_of: id
      description: Restricts the separation method to the SeparationMethodEnum vocabulary.
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_successor_step:
    name: has_successor_step
    description: Forward pointer from a LabSynthesisStep to the step(s) that follow
      it. Inverse of had_input_activity (prov:wasInformedBy). For RepetitionBlocks,
      the preceding step's has_successor_step points to both the RepetitionBlock and
      the first inner repeated step.
    from_schema: https://w3id.org/nfdi-de/dcat-ap-plus/labdata/
    rank: 1000
    slot_uri: dcatplab:hasSuccessorStep
    alias: has_successor_step
    owner: SeparationStep
    domain_of:
    - LabSynthesisStep
    range: LabSynthesisStep
    multivalued: true
  id:
    name: id
    description: A slot to provide an URI for an entity within this schema.
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi-de/dcat-ap-plus/labdata/
    rank: 1000
    identifier: true
    alias: id
    owner: SeparationStep
    domain_of:
    - Activity
    - AgenticEntity
    - Dataset
    - DefinedTerm
    - Document
    - Entity
    - LegalResource
    - LicenseDocument
    - Resource
    range: uriorcurie
    required: true
  title:
    name: title
    description: The slot to provide a title for the Activity.
    notes:
    - not in DCAT-AP
    from_schema: https://w3id.org/nfdi-de/dcat-ap-plus/labdata/
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: SeparationStep
    domain_of:
    - Activity
    - AgenticEntity
    - Any
    - Attribution
    - Catalogue
    - CatalogueRecord
    - ChecksumAlgorithm
    - Concept
    - ConceptScheme
    - DataService
    - Dataset
    - DatasetSeries
    - DefinedTerm
    - Distribution
    - Document
    - Entity
    - Frequency
    - Geometry
    - Identifier
    - LegalResource
    - LicenseDocument
    - LinguisticSystem
    - MediaType
    - MediaTypeOrExtent
    - PeriodOfTime
    - Plan
    - Policy
    - ProvenanceStatement
    - QualitativeAttribute
    - QuantitativeAttribute
    - Resource
    - RightsStatement
    - Role
    - Standard
    - SupportiveEntity
    - Surrounding
    - TimeInstant
    range: string
    multivalued: true
    inlined_as_list: true
  description:
    name: description
    description: The slot to provide a description for the Activity.
    notes:
    - not in DCAT-AP
    from_schema: https://w3id.org/nfdi-de/dcat-ap-plus/labdata/
    rank: 1000
    slot_uri: dcterms:description
    alias: description
    owner: SeparationStep
    domain_of:
    - Activity
    - AgenticEntity
    - Any
    - Attribution
    - Catalogue
    - CatalogueRecord
    - ChecksumAlgorithm
    - Concept
    - ConceptScheme
    - DataService
    - Dataset
    - DatasetSeries
    - Distribution
    - Document
    - Entity
    - Frequency
    - Geometry
    - Identifier
    - LegalResource
    - LicenseDocument
    - LinguisticSystem
    - MediaType
    - MediaTypeOrExtent
    - PeriodOfTime
    - Plan
    - Policy
    - ProvenanceStatement
    - QualitativeAttribute
    - QuantitativeAttribute
    - Resource
    - RightsStatement
    - Role
    - Standard
    - SupportiveEntity
    - Surrounding
    - TimeInstant
    range: string
    multivalued: true
    inlined_as_list: true
  other_identifier:
    name: other_identifier
    description: A slot to provide a secondary identifier of the EvaluatedActivity.
    notes:
    - not in DCAT-AP
    from_schema: https://w3id.org/nfdi-de/dcat-ap-plus/labdata/
    rank: 1000
    slot_uri: adms:identifier
    alias: other_identifier
    owner: SeparationStep
    domain_of:
    - Activity
    - AgenticEntity
    - Dataset
    - Entity
    range: Identifier
    required: false
    multivalued: true
    inlined_as_list: true
  has_part:
    name: has_part
    description: The slot to provide an Activity that is part of the Activity.
    notes:
    - not in DCAT-AP
    from_schema: https://w3id.org/nfdi-de/dcat-ap-plus/labdata/
    rank: 1000
    slot_uri: dcterms:hasPart
    alias: has_part
    owner: SeparationStep
    domain_of:
    - Activity
    - AgenticEntity
    - Catalogue
    - Entity
    range: LabSynthesisStep
    multivalued: true
    inlined_as_list: true
  had_input_entity:
    name: had_input_entity
    description: The slot to specify the Entity that was used as an input of an Activity
      that is to be changed, consumed or transformed.
    notes:
    - not in DCAT-AP
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi-de/dcat-ap-plus/labdata/
    rank: 1000
    slot_uri: prov:used
    alias: had_input_entity
    owner: SeparationStep
    domain_of:
    - Activity
    range: Entity
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  had_output_entity:
    name: had_output_entity
    description: The slot to specify the Entity that was generated as an output of
      an Activity.
    notes:
    - not in DCAT-AP
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi-de/dcat-ap-plus/labdata/
    rank: 1000
    slot_uri: prov:generated
    alias: had_output_entity
    owner: SeparationStep
    domain_of:
    - Activity
    range: Entity
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  had_input_activity:
    name: had_input_activity
    description: The slot to provide a previous Activity that informed the Activity
      by being causally via a shared participant.
    notes:
    - not in DCAT-AP
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi-de/dcat-ap-plus/labdata/
    rank: 1000
    slot_uri: prov:wasInformedBy
    alias: had_input_activity
    owner: SeparationStep
    domain_of:
    - Activity
    range: LabSynthesisStep
    recommended: true
    multivalued: false
    inlined: true
    inlined_as_list: true
  carried_out_by:
    name: carried_out_by
    description: The slot to specify the AgenticEntity that played a certain part
      in carrying out the Activity, either via having a specific role, function or
      disposition that was realized in the Activity.
    notes:
    - not in DCAT-AP
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi-de/dcat-ap-plus/labdata/
    rank: 1000
    slot_uri: prov:wasAssociatedWith
    alias: carried_out_by
    owner: SeparationStep
    domain_of:
    - Activity
    range: AgenticEntity
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_qualitative_attribute:
    name: has_qualitative_attribute
    description: The slot to relate a qualitative attribute to an EvaluatedEntity,
      EvaluatedActivity or AgenticEntity
    notes:
    - not in DCAT-AP
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi-de/dcat-ap-plus/labdata/
    rank: 1000
    slot_uri: dcterms:relation
    alias: has_qualitative_attribute
    owner: SeparationStep
    domain_of:
    - Activity
    - AgenticEntity
    - Entity
    range: QualitativeAttribute
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_quantitative_attribute:
    name: has_quantitative_attribute
    description: The slot to relate a quantitative attribute to an EvaluatedEntity,
      EvaluatedActivity or AgenticEntity
    notes:
    - not in DCAT-AP
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi-de/dcat-ap-plus/labdata/
    rank: 1000
    slot_uri: dcterms:relation
    alias: has_quantitative_attribute
    owner: SeparationStep
    domain_of:
    - Activity
    - AgenticEntity
    - Entity
    range: QuantitativeAttribute
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  part_of:
    name: part_of
    description: The slot to provide an Activity of which the Activity is a part.
    notes:
    - not in DCAT-AP
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi-de/dcat-ap-plus/labdata/
    rank: 1000
    slot_uri: dcterms:isPartOf
    alias: part_of
    owner: SeparationStep
    domain_of:
    - Activity
    - AgenticEntity
    - Entity
    inverse: has_part
    range: Activity
    multivalued: true
    inlined_as_list: true
  type:
    name: type
    description: This slot is described in more detail within the class in which it
      is used.
    from_schema: https://w3id.org/nfdi-de/dcat-ap-plus/labdata/
    rank: 1000
    slot_uri: dcterms:type
    alias: type
    owner: SeparationStep
    domain_of:
    - Agent
    - ClassifierMixin
    - Dataset
    - LicenseDocument
    range: DefinedTerm
    inlined: true
  rdf_type:
    name: rdf_type
    description: The slot to specify the ontology class that is instantiated by an
      entity.
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi-de/dcat-ap-plus/labdata/
    rank: 1000
    slot_uri: rdf:type
    alias: rdf_type
    owner: SeparationStep
    domain_of:
    - ClassifierMixin
    range: DefinedTerm
    recommended: true
    inlined: true
class_uri: OBI:0600014